Divergences for prototype-based classification and causal structure discovery:Theory and application to natural datasets

Dit proefschrift bestaat uit twee delen. In het eerste deel beschrijven we hoe de op prototypen gebaseerde classificator LVQ uitgebreid kan worden door gebruik te maken van maten uit de informatie theorie. Daarnaast vergelijken we verschillende manieren van datarepresentatie in deze LVQ configuratie, in dit geval histogrammen van foto’s, SIFT- en SURF-kenmerken. We tonen hoe hiervoor een enkele gecombineerde afstandsmaat kan worden geformuleerd, door de afzonderlijke afstandsmaten samen te nemen. In het tweede deel onderzoeken we het vinden van causale verbanden en toepassingen op problemen die uit het leven zijn gegrepen. Daarnaast verkennen we de combinatie met relevantie leren in LVQ en tonen we enkele toepassingen

Matrix Relevance Learning From Spectral Data for Diagnosing Cassava Diseases

We discuss the use of matrix relevance learning, a popular extension to prototype learning algorithms, applied to a three-class classification task of diagnosing cassava diseases from spectral data. Previously this diagnosis has been done using plant image data taken with a smartphone. However for this method disease symptoms need to be visible. Unfortunately for some cassava diseases, once symptoms have manifested on the aerial part of the plant, the root which is the edible part of the plant has been totally destroyed. This research is premised on the hypothesis that diseased crops without visible symptoms can be detected using spectral information, allowing for early interventions. In this paper, we analyze visible and near-infrared spectra captured from leaves infected with two common cassava diseases (cassava brown streak disease and cassava mosaic virus disease) found in Sub-Saharan Africa. We also take spectra from leaves of healthy plants. The spectral data come with thousands of dimensions, therefore different wavelengths are analyzed in order to identify the most relevant spectral bands for diagnosing these disease. To cope with the nominally high number of input dimensions of data, functional decomposition of the spectra is applied. The classification task is addressed using Generalized Matrix Relevance Learning Vector Quantization and compared with the standard classification techniques performed in the space of expansion coefficients

Combining dissimilarity measures for prototype-based classification

Prototype-based classification, identifying representatives of the data and suitable measures of dissimilarity, has been used successfully for tasks where interpretability of the classification is key. In many practical problems, one object is represented by a collection of different subsets of features, that might require different dissimilarity measures. In this paper we present a technique for combining different dissimilarity measures into a Learning Vector Quantization classification scheme for heterogeneous, mixed data. To illustrate the method we apply it to diagnosing viral crop disease in cassava plants from histograms (HSV) and shape features (SIFT) extracted from cassava leaf images. Our results demonstrate the feasibility of the method and increased performance compared to previous approaches